Antigen

Antigen Class

TFs and others

Antigen

SMARCC1

Cell type

Cell type Class

Muscle

Cell type

RH-4

NA

NA

Sample

source_name

RH4

cell line

RH4

diagnosis

rhabdomyosarcoma

treatment

7 days treatment with 250nM cis conformation (inactive) PROTAC compound (University of Dundee, Institute of Chemical and Structural Biology available at Boehringer Ingelheim (opnMe))

genotype

wild type

antibody

anti-SMARCC1, Abcam, ab172638

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

After reverse crosslinking, ChIP DNA was purified using MinElute PCR Purification Kit (Qiagen). ChIPseq Library

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

28202644

Reads aligned (%)

80.6

Duplicates removed (%)

64.2

Number of peaks

1755 (qval < 1E-05)

hg19

Number of total reads

28202644

Reads aligned (%)

75.2

Duplicates removed (%)

63.3

Number of peaks

1828 (qval < 1E-05)